rs38300643 SNP Detail

Summary

• ID
  rs38300643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:123268563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGGGT GCAGGGAGAA
  CTGAGGCTAA GACCACTGGT TTGATAAACT TTCAAGTGCT GTTTGACTTT TCTGTCTGTT
  TCTTGGACAA GATAGAAACC GAAAAGAGAG CAGTAGGAAC CAGGAACACA GACTGCTTTC
  AGACCTTAGC AGGTTGCTCT TGAGCATGGT AGAAATACCC TGGAGCTGTG TTATCCACAT
  R
  TGAAGGGCTT CCATTCTGGG CACTGGAGAC TGAGGCAGGA GGCAGGAGGC TCAAAGGATC
  TTTGTCAAAA ATAAGCAAAG GAAGCACTCT CCTATTCTGG ATTTAGCACA GTAGCGTATT
  TCTGGTTAGA CAGATGCTCA AGCCATGTTC TGAGCAGCAG AGTTGTGGTT CCATAATTTG
  TGTTCATTTC AGAAATTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss50808738	NES14203107	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs38300643					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50808738	NES14203107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123268563 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	Intron
Rr689371	regulatory region 689371	1298 bp proximal
Rr689372	regulatory region 689372	1385 bp proximal