rs38307809 SNP Detail

Summary

• ID
  rs38307809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:83105517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATATGCATT TACCAATAAG ATGCCAGAGC TTAGTTTTCT
  GGGTGTTTGT TTGCTTGGTT GATTGGTTTG GTTTTGCTTG GCTTTGCTTT GCTTTGCTTC
  W
  TTTTATAGCT CCCTACACTC AATGTATCCA GACAGTGTTC TCATATAGTT ATCAAATGTT
  GAAATTATTG ATCAAACAAT CAGACCTGTG CTATTTTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971140	NES14983043	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	T	A	T	A		T	A	T		A
ss145303820	ENSMUSSNP2762907	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322735856	CHEV_8_84902787	CHEVERUD	SCREENING_POP	f	SNP												A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38307809					SNP	A	A	A	A	A	A	A	T	A	T	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971140	NES14983043	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83105517 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il15	interleukin 15			Intron
				Noncoding-Transcript-Variant
Tssr81957	transcription start site region 81957			166 bp downstream
Tssr81958	transcription start site region 81958			183 bp downstream
Tssr81959	transcription start site region 81959			1192 bp downstream
Tssr81960	transcription start site region 81960			1377 bp downstream
Tssr81961	transcription start site region 81961			1413 bp downstream