rs38310204 SNP Detail

Summary

• ID
  rs38310204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10584953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC TGAAATTGCA AGGCCTAGAT
  R
  CTTACCAGCC TCAGTCCTGG CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601246	NES13642988	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38310204					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601246	NES13642988	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10584953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	1536 bp distal
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	within coordinates
Rr362968	regulatory region 362968	352 bp distal
Rr405857	regulatory region 405857	1933 bp downstream
Tkfc	triokinase, FMN cyclase	1935 bp upstream
Tssr155069	transcription start site region 155069	1975 bp downstream
Tssr155070	transcription start site region 155070	1945 bp downstream
Tssr155071	transcription start site region 155071	1894 bp downstream
Tssr155072	transcription start site region 155072	1641 bp downstream
Tssr155073	transcription start site region 155073	1301 bp downstream
Tssr155074	transcription start site region 155074	203 bp upstream
Tssr155075	transcription start site region 155075	658 bp upstream
Tssr158207	transcription start site region 158207	1674 bp upstream