rs38310336 SNP Detail

Summary

• ID
  rs38310336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTTGCC CTTCTCGAGA
  GTTCATCCTT TGACATACAT GGACAGCAGG TTGTGTGAGA GTAGTTTTAT TCATAAGCAT
  GCCGCCAGCA TTCATTCAAT GACGTTAGAA AAAAAGAGAG AAATAAAATA AAATAAAAAG
  GAGAAACGGG AAGTAAACTA GTGTTTGTCA TGCTCCAAAT TCACTTCATG CTAGGTATAC
  M
  TGTAGCTCAG GCAGACCGGA TCTTTCTGCC ACAGGAGCGC CACACCCTTA CCCCAGTTTC
  AAAGGTGCTG ATTTTTTTTT TTTTTTGTAA ATTTCTCTTT ACATATTTTT AACATTATAA
  ACTTGATTTT AAAAAAAAGT TTGCAAAAAA AAAAAAGAAA GAAAAACACA TCAAAATTAA
  CCAAACCCCA AAACAATACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516749	NES14634627	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38310336					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516749	NES14634627	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cab39l	calcium binding protein 39-like			Intron
				Noncoding-Transcript-Variant
Cpgi6560	CpG island 6560			342 bp distal
Gm45935	predicted gene, 45935			793 bp upstream
Rr404137	regulatory region 404137			615 bp downstream
Rr493049	regulatory region 493049			809 bp distal
Rr493050	regulatory region 493050			682 bp distal
Rr493051	regulatory region 493051			within coordinates
Setdb2	SET domain, bifurcated 2			793 bp upstream
Tssr125903	transcription start site region 125903			1091 bp downstream
Tssr125904	transcription start site region 125904			677 bp downstream
Tssr129008	transcription start site region 129008			786 bp upstream
Tssr129009	transcription start site region 129009			576 bp upstream
Tssr129010	transcription start site region 129010			565 bp upstream
Tssr129011	transcription start site region 129011			366 bp upstream
Tssr129012	transcription start site region 129012			363 bp upstream
Tssr129013	transcription start site region 129013			356 bp upstream