rs38312177 SNP Detail

Summary

• ID
  rs38312177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5876428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGAGGG AATAGGTACG
  GCCATCTAAG TCCCAGCCTG AGAGGTACTC AGAGAGCTTG GGCCTTACAA GCCCTCAGAA
  ATGGGGGGAG TCAGAACACA TCCTGTAAGA TGAGCAAAGG ATTAATTCAA CATGGGGGTG
  ACAGGACCCT CATCTGTGAC TGCAGGAACC CCAAGAGTTG AGTCACATAA GGAACAAGAC
  Y
  ACTGGTTAAA TGGCTTCTAG GTATGTCCTC AACCCAAGGG GCGTCACATG ATCTCAGTGT
  TAGTAGCTAG GCCCCACCAT AACACATGGA AGACAACCTT CAACCAACAA CCACAACTGG
  GAAAAAGAAA CCAGTTCACT GCAATAAAAA CTCTGTGTGT GTGTGTGTGT GAGAGAGTGT
  GTGTGTGAGA ATGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577292	NES13648692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38312177					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577292	NES13648692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5876428 () rs orientation: forward

Symbol	Name	Function Class
Gm55522	predicted gene, 55522	1693 bp upstream
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	1973 bp proximal
Tssr157766	transcription start site region 157766	393 bp upstream
Tssr157767	transcription start site region 157767	271 bp downstream
Tssr157768	transcription start site region 157768	367 bp downstream
Tssr157769	transcription start site region 157769	429 bp downstream
Tssr157770	transcription start site region 157770	519 bp downstream
Tssr157771	transcription start site region 157771	559 bp downstream
Tssr157772	transcription start site region 157772	1765 bp downstream
Tssr157773	transcription start site region 157773	1896 bp downstream