rs38314126 SNP Detail

Summary

• ID
  rs38314126
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:68514179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTTCCA AATCTATCCT
  CTTCCCTATA CCTGCACCTG GACCCACTCA AAAAAAAAAA AAAAAAAAAA AATCCTATGG
  GGCAGAAATC CCGGATCCCA CTGTCGGGAG AGCCAGAGTC TGGAAAAATG AAATTCTGTG
  CCTGGTGGGT GTTTAACATC CCTCTACATC TAGGGTAATA GCAAAAGTAA ACACTGCTTA
  K
  AAAACTGACA GCATTGTAAA CTCAGCCTCT AACCTATGTT AGCCTGCTTT ACACAATTTT
  TTTCATAACA TCAGTTGCCA AGCTATCTAT GAAAAAAAAA AGTTAAATTC ATGCAAAAAA
  GAATCATTTA AATGTCTTTA AAAGATAGAA GAAATGTTAC ACAGAATAAT CTCCCTGTCT
  GTTTGTTTTC TCCGTGCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51964640	NES14987261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38314126					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51964640	NES14987261	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68514179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20399	CpG island 20399	296 bp proximal
Psd3	pleckstrin and Sec7 domain containing 3	within coordinates
Rr664367	regulatory region 664367	109 bp proximal
Rr664368	regulatory region 664368	690 bp proximal
Tssr81474	transcription start site region 81474	151 bp upstream
Tssr81475	transcription start site region 81475	719 bp downstream
Tssr81476	transcription start site region 81476	917 bp downstream