rs38315126 SNP Detail

Summary

• ID
  rs38315126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACTTCT TCCCCTAGGG
  GTTTGTGGCC TTTGGACTGC AGTGATAGAC AAGAGAGAGT CTTTCTGGAG CTTGATTTTT
  TTTGTAGGGG TGGGGTGGGA GGGCTCTTCC TGCCTGTTTC TCAGAACTGT TGGTAGAGAC
  AACTGGGTAA CCCATGATTC CAGGTGAGGA CTGAATTGTG TCTGTGTCAC ACTGGGAACT
  R
  TCTTTCCTCT CCAGGTCTCT GATGCCACTG GACAGATGAA TCTGACCAAG GTGGCTGACT
  CCAGCCCTTT TGCCTCTGAA CTGCTAATTC CAGATGACTG CTTTGTTCTG GACAACGGGC
  TGTGTGGCAA AATCTACATC TGGAAGGGTA TGTATGGCTC CTCTGTGTGA GCCTGAGGGC
  ACCGCAGCTG CTCTGAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51696090	NES14820954	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38315126					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696090	NES14820954	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535707 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	1381 bp downstream
Tssr57148	transcription start site region 57148	37 bp downstream
Tssr57149	transcription start site region 57149	42 bp upstream
Tssr61469	transcription start site region 61469	909 bp upstream