rs38318552 SNP Detail

Summary

• ID
  rs38318552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12827667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGAAGG GCAGGGACTG
  AGTTCATTCT GTTATCTGTG GTCATAACTT GTTCAGAGAT TTGTGAGTAC AGCTAGGAAC
  CAGACCAGAA GAGTCAAAGA AACATCCTAG AGCCCCCTCC CCCAACCCCC ATGAGCTTGC
  AGTTCTTGAT GGCACGTCAG TGTTGAAGGT AGACTTACCT AATGATTGTT GAACTGTGAT
  R
  CTTGCAGGAC CTGCTGAGAA GCCGTGGAGA GTATTGTAAG AACAGGAAAT CTAAGGAAGG
  TGTATTAGTC GGGGTTCTCT AGAGTTAGAG AATTTATACA GTGAATCTCT TCATTTCATA
  AGAAGACTTT GTTAGAATAG CTTACCTCTT TTTCTAGCTA ACTGTGATGG TTTGTATATG
  CTTGGCCCAG GGAGTGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51593077	NES14609160	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38318552					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593077	NES14609160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12827667 () rs orientation: forward

Symbol	Name	Function Class
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	841 bp distal
Drosha	drosha, ribonuclease type III	within coordinates
Gm62094	predicted gene, 62094	1443 bp downstream
Rr306236	regulatory region 306236	1734 bp proximal
Rr311575	regulatory region 311575	1066 bp distal