rs38318627 SNP Detail

Summary

• ID
  rs38318627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49596739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGCA GGGGGAAAGG
  GCCCATGTTC CTGCCTCTTT TGGGCTTCCT GAACTTTCCA GAGATCTGTC ACGGGGATCA
  CAATGCTTGA GTGTCTGCTG CAGCCTTTGG AAGCTACAGA AGAGCGCGAG CTACGTGGAC
  TTTGAGTGAT TGATGTGCCA TGGCTTTCTG GTTCTCCTGC CTCTGCAGGC TTCCTCGTGG
  Y
  TGCCTCTGAG CCCTAGTCTA AGCTCCCTTC CTGCATTTAC TGCATTCGGG CTGCGGTTAC
  TGGAGTAAGG CAGTTGAGGT CCAGCTCAGC CTGGAGCTGT GTGTGTGGCT GTGAGGCCCA
  GCCTGCTGCC TAACCCCTTC TCTGCTTTGT CCTTTCAGAA ATAAGCAGCG CATGCACTTT
  GCCCTCAGAA GTCTGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51106133	NES14353447	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38318627					SNP	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106133	NES14353447	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49596739 () rs orientation: forward

Symbol	Name	Function Class
Ippk	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	within coordinates
Rr276358	regulatory region 276358	139 bp distal
Rr279503	regulatory region 279503	1788 bp distal