rs38319335 SNP Detail

Summary

• ID
  rs38319335
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45511203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACCCGA GTATTTAATG
  AGCTGGTGTT GACTTTTTGA TTTCTTGTTC TTGGTGGAGA ACTGTGAGCT GCCTCAGCTA
  ATTAGGAGTC TCTGCTCAAA AAGCATCCCG CTTTCTGTCC TTCGAAAAGA CCAGGAACTC
  ATCCCCACTC CTTGGGGACC CCTTCTCCTG TCCCCTTGAA CTTCTGACTT GCCTTGAGAG
  D
  CTTGTTCGCT TGCAAAAATG TGCCTCTTCC AGGAAGGCTA CCTGGATTCA CCTGCTTGCT
  TCCAACTGTC CCTTTTCTAT GAAATCAAAA GTGCCCTTGA GTCTTTTTAT AGGACACCTA
  CAATTATCAA TGGAATGTCA GAACACCTGT CCCCTGTTTG CAGCCACAGA GCCACCAGAG
  CGGAAAAAAT CATCTGGAGT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52012088	NES15026931	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	T	T	T	T	T
ss136415380	ENSMUSSNP1251181	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38319335					SNP	T	A	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52012088	NES15026931	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45511203 () rs orientation: forward

Symbol	Name	Function Class
Dscaml1	DS cell adhesion molecule like 1	within coordinates
Rr195123	regulatory region 195123	1398 bp proximal
Rr200398	regulatory region 200398	403 bp distal
Rr200399	regulatory region 200399	798 bp proximal
Rr203915	regulatory region 203915	1487 bp distal