rs38319748 SNP Detail

Summary

• ID
  rs38319748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5539067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCGGGGA TGCTAGTTAG
  ACACTTCGCT TCTGTGGCTC ATTAAAAGTG AAGGAGCCTC AGGGAGGATG AAGGTGGGAA
  CCTTGCTGGG GCAGGGATGT CTCAAGCTGA GGGACACAGG GCTCAATAGA ACATAGAGGT
  CCCTTCAGTG TTTGGAACAA CGCACGGTCT TCAGCTGTCA CGCTGTCACT CCGGAAGTCG
  Y
  CGGGAGCCCA ATTCGCAGAC CCTCTTCTCA GTCTAGCTTT TGTGCACCCG CCTCTTTCCT
  CAAGCAGCCT TATAAGGAGC CTGCAGCTGG CGCTTGGACT GGGCACGCCC TCTGGAGGCT
  TATGCCCTAA TAAGGACATC TAGGGCATCC CGCGACCAGG GGCGGAAGGA GTGCGTCTCC
  AGGGTAACTG CGTGGCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50578868	NES13652101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38319748					SNP	T	T	T	T	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578868	NES13652101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5539067 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	within coordinates
Cfl1	cofilin 1, non-muscle	1416 bp upstream
Cpgi10453	CpG island 10453	669 bp distal
Cpgi10454	CpG island 10454	within coordinates
Cpgi10455	CpG island 10455	1214 bp proximal
Gm59148	predicted gene, 59148	147 bp upstream
Mus81	MUS81 structure-specific endonuclease subunit	606 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	487 bp downstream
Rr405805	regulatory region 405805	within coordinates
Rr405806	regulatory region 405806	1134 bp upstream
Tssr154437	transcription start site region 154437	279 bp upstream
Tssr154438	transcription start site region 154438	1436 bp upstream
Tssr154439	transcription start site region 154439	1473 bp upstream
Tssr154440	transcription start site region 154440	1518 bp upstream
Tssr157605	transcription start site region 157605	643 bp upstream
Tssr157606	transcription start site region 157606	89 bp upstream
Tssr157607	transcription start site region 157607	67 bp upstream
Tssr157608	transcription start site region 157608	7 bp downstream
Tssr157609	transcription start site region 157609	38 bp downstream