rs38322589 SNP Detail

Summary

• ID
  rs38322589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36055930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC ATTTAGTTGT TTACTTTTAC
  R
  CTGTTTCAGG TGTGAAGAGT TCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51452898	NES14433062	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38322589					SNP	G	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452898	NES14433062	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36055930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	1022 bp distal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	1103 bp upstream
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	926 bp downstream
Rr575296	regulatory region 575296	1858 bp distal
Rr575297	regulatory region 575297	1336 bp distal
Rr575298	regulatory region 575298	613 bp distal
Rr575299	regulatory region 575299	990 bp distal
Tssr28858	transcription start site region 28858	1341 bp downstream
Tssr33012	transcription start site region 33012	1173 bp upstream
Tssr33013	transcription start site region 33013	1134 bp upstream
Tssr33014	transcription start site region 33014	1121 bp upstream
Tssr33015	transcription start site region 33015	1099 bp upstream