rs38324279 SNP Detail

Summary

• ID
  rs38324279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39568840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAATAG CCAGTGGAGC
  CTTTGTTTCT TGAAGGAAAT CTGAAGTGAG TGAAAAAATT AGTTTTTCTG GAAAGATGAC
  AGTAGGCTAT CCTATAGACC TAGTAACTCG GAACAGATAT GTATGTCTTG TTTTATGAGG
  ATGAGCTTGA AAATTCATAT TCCCTCCCCA CTAATGGCCG GAGACTGAGC GCATCTGCGC
  R
  TCTACGTGCA TCTATTTGTG TTACAGCTCC CACTGCGAGT ACATTTCTAC GGCTGAAGTC
  AGGTCTCGAT TTGTTGCCAT CTTGGTGTTG CATCTTAACT GGACTGCCCT CATGTCCTTA
  TTTTTCTGCT TGCTTATTAC ATTAATAACA AGAGGAAATG CCAAAAAACC TCGAATTGGC
  TAAGGCTCGA GGCGTTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616956	NES14842186	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38324279					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616956	NES14842186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39568840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17326	CpG island 17326	379 bp proximal
Gm16272	predicted gene 16272	within coordinates
Gm42420	predicted gene, 42420	within coordinates
Ndufb2	NADH:ubiquinone oxidoreductase subunit B2	659 bp upstream
Rr146179	regulatory region 146179	within coordinates
Tssr55732	transcription start site region 55732	663 bp upstream
Tssr55733	transcription start site region 55733	684 bp upstream
Tssr60497	transcription start site region 60497	615 bp downstream