rs38324569 SNP Detail

Summary

• ID
  rs38324569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58778687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCAGAACC TCATCCTTTA GGGATGCACC CAGGACTCTG
  TGTGGAGAGG CTACTGGGGG AATTGGCAAG CCCCACACTG TTCCATGCAA GGTGACAGGC
  Y
  GCTGTGGCTC TGTGCTGGTG CGTCTCATCC CTGCCCCCAG AGGCACTGGC ATTGTCTCTG
  TTCCTGTGCC CAAGAAGCTC CTGATGATGG CCGGTATAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50903123	NES13490976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38324569					SNP	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50903123	NES13490976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58778687 () rs orientation: forward

Symbol	Name	Function Class
Gm17150	predicted gene 17150	within coordinates
Gm56672	predicted gene, 56672	1076 bp upstream
Rr550521	regulatory region 550521	1487 bp distal
Spmip5	sperm microtubule inner protein 5	within coordinates