rs38324879 SNP Detail

Summary

• ID
  rs38324879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16679869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC AAAGACGAAA AGAGCGGGGT
  Y
  CCTGATTTAG TCGCGCTACT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51882285	NES14894015	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38324879					SNP	C	T	T	T	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882285	NES14894015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16679869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	179 bp distal
Cpgi18407	CpG island 18407	316 bp proximal
Gm71929	predicted gene, 71929	291 bp upstream
Pnma8b	PNMA family member 8B	within coordinates
Rr368243	regulatory region 368243	1287 bp downstream
Rr642822	regulatory region 642822	1252 bp distal
Rr642823	regulatory region 642823	1318 bp distal
Rr642824	regulatory region 642824	within coordinates
Tssr64660	transcription start site region 64660	1224 bp downstream
Tssr64661	transcription start site region 64661	176 bp downstream
Tssr70792	transcription start site region 70792	287 bp upstream