rs38326842 SNP Detail

Summary

• ID
  rs38326842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39567884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGCAAC ACACACACAC
  ACACACACAC ACAAATAAAA TAATGGAAGC CTGGATCTCA GATGGCAGAA GAAGAGAATA
  ATCTCTTGAT TGACTGTGCT CTGATCACCA CATTTATGCC ATGGTACATG TGAGCCCACA
  CATAACAACA CTCAAGGTCT CCCTTGGGTT TGACTCCTAG GACAGGTTTC CTGTTACATA
  M
  AAGGGCAAAG AGGCCCACAT ATGGGCACAG AAGGCAAATT ATCAGTCATA TTTGATGCTT
  CCAAGTCACT AAATTCAAGT CTGGCCTTGA TGAGTACTTG ACTCTTGAAT ATGAAACATC
  ATAGCAAATT TCTAATATGT GATGTTGGTA CACTAATGTT ATAACCTAAA ACTGCATGTT
  CTTCAAATCA ACCAACCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616965	NES14842183	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38326842					SNP	A	A	A	A	A	A	C	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616965	NES14842183	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39567884 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17326	CpG island 17326	1335 bp proximal
Gm16272	predicted gene 16272	within coordinates
Gm42420	predicted gene, 42420	within coordinates
Ndufb2	NADH:ubiquinone oxidoreductase subunit B2	1615 bp upstream
Rr146179	regulatory region 146179	916 bp proximal
Tssr55732	transcription start site region 55732	1619 bp upstream
Tssr55733	transcription start site region 55733	1640 bp upstream
Tssr60497	transcription start site region 60497	1571 bp downstream