rs38327813 SNP Detail

Summary

• ID
  rs38327813
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTAACT TCTCCTGAGT
  GTTGGGATTA AAAGTGTGTG CCACTATGGC TGGCATTATT ATTACACAGA AGGAATTTGA
  GCTCATCTAG TAATTAACTT CCAGGTTATC TCAGCTGCTG AGTGTTGGGC ATAGCATTTG
  AGTCAGGACC AGTCTGAGTC CTGTCTGGGT CCTGTAGAGG CCTCATTTGT GGAGCGAGGA
  K
  GTAGGAGCCC TCTGACCTCA GGCCTCTCAT TGAGGGCTGT GTATTCAACA AATCCATGAC
  AATCTTCACT TTACTTCAGT TACTGCTTCC AAGACTGACC AGGCCTTAAG GTCCAGGGCC
  ATTCCCTACA GGTTTGATTT GGGGCATTTT TGTGAACACT TCTGCCTGGC AACATGTGCG
  TCATGATTCC TGACGGCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50416928	NES13460489	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	T	T	T	T	G	G
ss147250017	ENSMUSSNP5738270	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38327813					SNP	G	G	G	G	G	G	G	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416928	NES13460489	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938725 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1412 bp distal
Rr405669	regulatory region 405669	1805 bp downstream
Rr405670	regulatory region 405670	494 bp downstream
Rr405671	regulatory region 405671	3 bp upstream
Rr405672	regulatory region 405672	859 bp upstream
Rr538682	regulatory region 538682	1795 bp distal
Tssr151326	transcription start site region 151326	1797 bp downstream
Tssr151327	transcription start site region 151327	1785 bp downstream
Tssr151328	transcription start site region 151328	636 bp downstream
Tssr151329	transcription start site region 151329	565 bp downstream
Tssr151330	transcription start site region 151330	289 bp upstream
Tssr151331	transcription start site region 151331	325 bp upstream
Tssr151332	transcription start site region 151332	1344 bp upstream
Tssr151333	transcription start site region 151333	1882 bp upstream
Tssr153492	transcription start site region 153492	1639 bp upstream