rs38328709 SNP Detail

Summary

• ID
  rs38328709
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80597767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCCTGG GAAACCCCGT
  GTTCTCACGC AGGAGGCCAC TCTCCCGTCC TCCCACATCT CTCCACCCTC CCCGGGTCCT
  TTCAGAGTAG GAAGGACTTG CACTTCAAAG TCACATGGGT CGTTCTCAAG GATGCTTCTC
  CTTAGCCCTC AGAGAACCGT TTGTGGAACT CGTGAGGGAT GACAAAGACT ATGACAAACC
  W
  GGCTTACCCT CAGGTCCCGA GGGAACACAG ACACTTTTTG GCACTCTGGC CACAGACTCA
  GAGCTTTCCG CATGCCTGGC TTACCCTGAA AAGCCCTTGC CTCTCCAGGA GCGTGACCCT
  GGCAGGGCCC AACAGGACTA ACCTTTGGGT CCTCCGTTGT CTCTAAATAG AGGAACTCGG
  GGACACTGTA GAAACGCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50521920	NES13678040	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38328709					SNP	T	T	A	T	T	T	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521920	NES13678040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80597767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	341 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Tssr152111	transcription start site region 152111	638 bp upstream
Tssr152112	transcription start site region 152112	675 bp upstream
Tssr154031	transcription start site region 154031	228 bp downstream