rs38330228 SNP Detail

Summary

• ID
  rs38330228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGGTCAG TCAGGAGACC
  TCAGAGAGGC GACAGGGGGC AGGGCTTCCT GTGGAAAAGG GCTGGACGGC GGCGGCAGCC
  TCTTGCCTGG CTCTGCGGGG CTTTCCTCCC GGCAAGGGCT TTGCCGAGGT CACTCGCGCG
  AGGCCGCTCT TGGCGCGCCC GTGGGAGGCT CGGTGGCGTG GGAGGACCAG CGACCTGCGG
  R
  TTCCTCGAGC TCCCACGGCG CTGGCAGCGA CGGTCCCCCA CCCCCACCCC TATCCCCAGG
  CTTCCACCAG AAGGCTCCGC AAGACTCACG GACCTCCAAG TCCCCAGGTA CCTATTGGTC
  ACCTGTTTAG CTTGAGAGTG GGGGACTGTC GCTTGCCTGC TTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51618323	NES14659898	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	A	A	A		A	A	A	G		G
ss320956920	CHEV_3_127492982	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38330228					SNP	G	G	A	G	A	G	A	A	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51618323	NES14659898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	within coordinates
Cpgi13801	CpG island 13801	574 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65225	predicted gene, 65225	329 bp downstream
Rr584859	regulatory region 584859	1750 bp distal
Rr584860	regulatory region 584860	142 bp distal
Rr584861	regulatory region 584861	245 bp distal
Rr584862	regulatory region 584862	within coordinates
Rr584863	regulatory region 584863	183 bp proximal
Rr584864	regulatory region 584864	751 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	862 bp downstream
Tssr31595	transcription start site region 31595	850 bp downstream
Tssr31596	transcription start site region 31596	817 bp downstream
Tssr31597	transcription start site region 31597	777 bp downstream
Tssr31598	transcription start site region 31598	754 bp downstream
Tssr31599	transcription start site region 31599	255 bp downstream
Tssr31600	transcription start site region 31600	187 bp downstream
Tssr31601	transcription start site region 31601	135 bp downstream
Tssr31602	transcription start site region 31602	81 bp downstream
Tssr31603	transcription start site region 31603	63 bp downstream
Tssr31604	transcription start site region 31604	39 bp upstream
Tssr31605	transcription start site region 31605	538 bp upstream
Tssr31606	transcription start site region 31606	736 bp upstream
Tssr31607	transcription start site region 31607	974 bp upstream
Tssr31608	transcription start site region 31608	1042 bp upstream
Tssr31609	transcription start site region 31609	1093 bp upstream
Tssr31610	transcription start site region 31610	1202 bp upstream
Tssr31611	transcription start site region 31611	1310 bp upstream
Tssr35598	transcription start site region 35598	306 bp upstream
Tssr35599	transcription start site region 35599	224 bp upstream
Tssr35600	transcription start site region 35600	196 bp upstream
Tssr35601	transcription start site region 35601	163 bp upstream
Tssr35602	transcription start site region 35602	137 bp downstream