rs38333012 SNP Detail

Summary

• ID
  rs38333012
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110228313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCATGGCT CCCAGAAACA AGATCAGCCC TCAAGGCTAT
  GGCCGCCGGC GCCGGCGTTC CCTGCTGGAG GTCCTCCGGT CCCGGACTGT GGAGTCCTCC
  M
  AGGAGCAGAC ACACACAGCC CCAGGCCCCT GGGCGCACAT CTCCAGACTC TTTAGGATAT
  AGGTGCGGGT GACAGCATTG AACAGTCGGG CGAGTATCCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50455961	NES14118597	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38333012					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455961	NES14118597	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110228313 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	within coordinates
Cpgi19576	CpG island 19576	1316 bp distal
Cpgi19577	CpG island 19577	within coordinates
Cpgi19578	CpG island 19578	1199 bp proximal
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	within coordinates
Rr400547	regulatory region 400547	1101 bp upstream
Rr653268	regulatory region 653268	1539 bp distal
Rr653269	regulatory region 653269	1870 bp distal
Rr653270	regulatory region 653270	1435 bp distal
Rr653271	regulatory region 653271	539 bp proximal
Rr653272	regulatory region 653272	1106 bp proximal
Rr653273	regulatory region 653273	1239 bp proximal
Tssr68500	transcription start site region 68500	1440 bp downstream
Tssr68501	transcription start site region 68501	561 bp downstream
Tssr68502	transcription start site region 68502	420 bp upstream