rs38335554 SNP Detail

Summary

• ID
  rs38335554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATAAAAA GAAGCTGCGA
  CGAGATTCTT GTGTACGAAA CCAAGGGCAA AATACTGAGG GTGGAAAGGG AAAGTATTCG
  CCTCAAAAGT AAACTTTTTA ATAGTACATA AAATAGGAAT GGGTTTAGCC CTTACCCCAC
  CCACTCCTAA CTCTTAGGAG TGTCCAGTAT TCAGAGCAAG GTCAAGGAGG TGCAGTAACA
  R
  CTCCACCAAA CAGTGGACTC AGGATAATGG GCTTGGCTTG TCAGCCCTGG TATCAAGCAG
  AAAAAGGGTA AGCAGAGTTA TAAAACCCTT GGATAATACC AGCAGTTGGG AGTATGGGTC
  TAGTGCCAGA AATAAAGGCA ACAAGTCAAG GGCAGGGGTA AAGGATTAGA GGAAGGAGAA
  GGCAATAGGC AGGAGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674820	NES14008201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38335554					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674820	NES14008201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	740 bp distal
Gm48081	predicted gene, 48081	178 bp downstream
Rr676656	regulatory region 676656	924 bp distal
Rr676657	regulatory region 676657	819 bp distal
Rr676658	regulatory region 676658	600 bp distal
Rr676659	regulatory region 676659	99 bp distal
Rr676660	regulatory region 676660	270 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	914 bp upstream
Tssr88821	transcription start site region 88821	963 bp upstream
Tssr88822	transcription start site region 88822	935 bp upstream
Tssr88823	transcription start site region 88823	908 bp upstream
Tssr88824	transcription start site region 88824	885 bp upstream
Tssr88825	transcription start site region 88825	866 bp upstream
Tssr88826	transcription start site region 88826	774 bp upstream
Tssr88827	transcription start site region 88827	692 bp upstream
Tssr88828	transcription start site region 88828	662 bp upstream
Tssr88829	transcription start site region 88829	644 bp upstream
Tssr88830	transcription start site region 88830	616 bp upstream
Tssr88831	transcription start site region 88831	583 bp upstream