rs38336661 SNP Detail

Summary

• ID
  rs38336661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105213783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTATAA CTCATGGTAG
  AATAGTTGAC TTACACATCT GAGGATTTGG AGTTGGTCTC TAGTACTATG TGTGCATGTG
  TGTGCCAGCA AAAAGTGCAT GGGCACATGC ATGTGCACGT ATATACAACA CACACACACA
  CAAATAAAAT AATATATTAA AAAGTCTATG CTTTTACAAT AGTGAAACCT ATGTTAATTA
  K
  GCTTACAGAG TCCTTCTCGG GATGCTCGTG GCTCACAATG AAGATGGTTG TATTGAACCC
  AGTGCCAGGC TAATGCCTGG TGTCTCCAGC CACCCAAACA CCTGCTTCCC AAACCCAGGA
  AAGCTCTCCC ATGGAATCAG GGATAGGGAA AGAAAGCCTC CCTCTGTGCC TAGCTCAGCA
  CTAGTCTTGT GATAGATGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss51921063	NES14940178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs38336661					SNP	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51921063	NES14940178	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105213783 () rs orientation: forward

Symbol	Name	Function Class
Apbb1	amyloid beta precursor protein binding family B member 1	within coordinates
Tssr74041	transcription start site region 74041	899 bp downstream
Tssr74042	transcription start site region 74042	924 bp downstream
Tssr74043	transcription start site region 74043	995 bp downstream