rs38337299 SNP Detail

Summary

• ID
  rs38337299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34609100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGTAGA AGCATCACAT
  GAGCAAGGCC TCTCTCGGGG TGGGGGTAGA GTCTGCCTCT CTTGCCTGGG TTCCCTTTGG
  AAACAGAGAG TAAAGACCTG ACTTTGAAGG TCAAGGAAGG ATGGGACATC AGGGAAATTG
  AGGGAGCCAT TTAAATGAAA GCAGTTGTTA GCTTATTTGT AGGAACAGCT TGAAGCCAGG
  Y
  GTGTGGTGAT TTAAATATGC TTGGCTTAGG GAGTAGCAGT ATTAGGAGGT GTGGCCTTGT
  TGGAGGAGGT GTAGCCTTGT TGGAGTGGGT GTGGCCTTGT TGGAGGAAGT GTGTCACTGT
  AGGGGTGGAC TTTGAAGCTC CACCCAGTAT GGAAGAGACA GTCCTCTCCT AGTGGCCTTC
  AGATGAAGAT GTAGAACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51236983	NES14283314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38337299					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51236983	NES14283314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34609100 () rs orientation: forward

Symbol	Name	Function Class
Gm19225	predicted gene, 19225	1198 bp upstream