rs38337797 SNP Detail

Summary

• ID
  rs38337797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78182692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGAGGA GATGGACATC
  CTTAAAAACC AGCCCTCGGT TTCCTGGCTT CTGGGTTTCT GAGATAAGTA GAGAAGAACT
  GTGGATGGAA GAACACAGCA CATTGAGCAG AACAGCTTTG GAATTATAGC ATCTTAAGAA
  AAGAAACTCG GGAGTTCGGA GCCAACAAGG AGGGAGTAGA GGCTGAAAGG CTCACCTAAA
  R
  AGAGGCATTC TCTGTCTCAA ACTATTGATA AAGCAAATGT CACACTATCT GCAGGAAGAA
  CAGAAAACTG AAGCTGTCCC ATGTGGAAAG GGAATCGGGA ATCGTTGTGA CATCCCTAGA
  GATGGAGATG TCTTAATAGG CACAGAAATG TCACCTGGTT GTGGAAAAGA GCCATCTCTG
  TGATACCCAA CAAAATCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51284800	NES14519446	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38337797					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51284800	NES14519446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78182692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	1849 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	304 bp proximal