rs38337823 SNP Detail

Summary

• ID
  rs38337823
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44382415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACACAC TAACCTCCCC
  ATTCCACCCC GCCCCCCCAA CCTCCCTGCA AAACCCACAC CATCCATCTT GAGACCATGA
  TACCTTTTCT ACTCTGGGGA CTTGCAAACC TCTCTGGACT ATTAGCTTTC ATCCAAGTGT
  GAGAAAGCAC CCAGGGGCTT CCTGTCCCCT GAAGGCAGGA CATTCCAGGA AGAGGAGTGA
  R
  CATGACTTCC CAGGGCTGGG GTAACAGTTC TTCATGTACC TGTGTGCTGC GTCCATGTGG
  CCACCATGTG ACAGTGGAGA CCTGGCCTGT CCCCTACCTA GCAGTCAGCT GATGCTGTGT
  TTGACTCAAT GTTAGATTCT TGGTTCCCTG CTGCCAGAGT GTAACCTCAA GTTACCCTCA
  GGAAGGGTAG GCGGGTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50801838	NES13525199	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38337823					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50801838	NES13525199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44382415 () rs orientation: forward

Symbol	Name	Function Class
Rr548236	regulatory region 548236	51 bp proximal
Rr548237	regulatory region 548237	686 bp proximal
Scd1	stearoyl-Coenzyme A desaturase 1	474 bp downstream
Tssr159446	transcription start site region 159446	606 bp downstream
Tssr159447	transcription start site region 159447	783 bp downstream
Tssr159448	transcription start site region 159448	815 bp downstream
Tssr159449	transcription start site region 159449	867 bp downstream
Tssr159450	transcription start site region 159450	894 bp downstream
Tssr159451	transcription start site region 159451	966 bp downstream
Tssr159452	transcription start site region 159452	1256 bp downstream
Tssr159453	transcription start site region 159453	1315 bp downstream
Tssr159454	transcription start site region 159454	1347 bp downstream
Tssr159455	transcription start site region 159455	1640 bp downstream
Tssr159456	transcription start site region 159456	1762 bp downstream
Tssr159457	transcription start site region 159457	1806 bp downstream
Tssr159458	transcription start site region 159458	1836 bp downstream
Tssr159459	transcription start site region 159459	1926 bp downstream
Tssr159460	transcription start site region 159460	1963 bp downstream