rs38339530 SNP Detail

Summary

• ID
  rs38339530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACTTCTC CAGTACATTT
  AGGGCCATCT TCTGTCCATT ATAATTACAA CATGTCTCAA ACAGCCTCTG CAAGGATGCA
  GAGACTTAAA GGAATACCAC AACCTTTAGG AAATCAGGGA TCATTTCAGC TGATTTAGTA
  AATTCAACAG GGTGGCATAG AGTGCTATCA GTAACACGGA CTTTAGACCA TAGTAAGGGA
  R
  GCCTCTGCTT TGGGTTCTAC TGTCACTGTT TGCAAAACTC CTTAGACTCT ACAGGGCTGA
  GTTCTTGTAC TCCTTCCTTT ATACCATGAT GCTTAGAATA CTGAATCTCT ACCCATCCAT
  TGTCTAGTCT GCATGCTTGA GTAGGGCTCT GCACTGGGTC TGAAAAACCC TAAAGGGTGA
  GAGTCTAACA AAGTCTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288111	NES13774261	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G		A	A	G	A
ss133127214	ENSMUSSNP6002341	ENSEMBL	ENSEMBL_Sanger	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38339530					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288111	NES13774261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355232 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1022 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1143 bp downstream
Rr135132	regulatory region 135132	769 bp proximal
Rr146156	regulatory region 146156	1231 bp distal
Tssr55644	transcription start site region 55644	1559 bp downstream