rs38339725 SNP Detail

Summary

• ID
  rs38339725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34464405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTCCAA CAGAGGAACT
  GACTGAACTA CATATAGTCT ATCAGTAAAA GGATTAAAAG CATCATTTAC AGACTGAAAA
  ACATTTAGTA CTGCTGTGAA TTCTGCCAGC TGAGCAGAAA GTCCAGGGGT CTCTATGACT
  ACCTGTTGAC TATTTATAAA ATATCCTGTG TGTCTTTTAG AGGAGCCATC AGTAAATATT
  W
  AAAAAAAGCA TTATGTAGAG GTTGTAAAGA TGTTTTATGA GGAAATATAA CCTTATGTGC
  ATTTAAAATT TTTATCAGCC TATCTTGAGG ATGACTATCT ATAATGCCAT CAAATCCTAT
  TTGAGCAAGC AACCAATCTG TACTATGCTG CTTTAACCAA CTATTTTGAT CCACATTAAA
  AGGCTGAATA ATGATATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237535	NES14285931	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38339725					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237535	NES14285931	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34464405 () rs orientation: forward

Symbol	Name	Function Class
Gm37233	predicted gene, 37233	694 bp downstream