rs38339867 SNP Detail

Summary

• ID
  rs38339867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51643410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCTCAT CCCAATTCTC
  TCTATTGTGT AACGCAATCT TGCTTCACCT CACCTTCCCT ACATAGTCGC TGACATCTTG
  CTTAGCAAAC TAACAACACC CTTGTGACAC ATCTTTCTTA AAGATGCCGA AATATTCTAT
  ATAGATCAGC TGTTTTCCTT TTGTGCCACT TGCCAACGAA CATTCTTTTC TCAACCAGCT
  R
  TTAGAAGAGA TCTCAAACTT CAGACCACTT ACTTAATGCT TCCTATGGCC AGACCCTGTT
  CTCAGCACTA GACATGGGAT TATTTCTGTG CCTCAAACTG ACTGTGTTCT CACCAAGACT
  TCACATATTG CCAAGAATGA TCAGAGAGAA AAACAATCCT GGTAAATTGG TTTCCCCTGT
  ACCAAATATT CTTTCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115376	NES13865351	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38339867					SNP	G	G	G	G	A	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115376	NES13865351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51643410 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	1763 bp upstream
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates