rs38342353 SNP Detail

Summary

• ID
  rs38342353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66482296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAGACT TTAAAGCACC
  TACTCCCTAA TGAGACCTGG CTCCCTAACC TCTTCCTCCA GCTTCAGGAA GGCAGGCCTT
  AAGAAATGGC TGATTCTCCT GCATGCCTAG TCTAACCCCT CAAACTTCCC CCAGCCTGGC
  AGTTAGTGTC ATCCAAATCC CCAAATTCCT CTTCTGATAT ATGAACAGAT CAAGGCACTT
  W
  GCCCAAATGA GTCCAACTGC AAGGAAACAC CACGTTTCAG GACAGAGTCT CCGGAAGGCC
  TCGGGCCTGA TCTGTTAATG CTATTGCCAT TTTGCTTTGA AGAGCTGAGC AAAATGAAAG
  CAAGGTGTCT CACTCACGAG CAGAGGGCGG CCAGTACCTT GCAAAGCAGC CAGATGCCTT
  TCCCATCCCG CTTGTCATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968264	NES13941307	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38342353					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968264	NES13941307	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66482296 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	820 bp proximal
Rr811	regulatory region 811	within coordinates
Rr577849	regulatory region 577849	1316 bp distal
Rr577850	regulatory region 577850	1782 bp proximal