rs38342538 SNP Detail

Summary

• ID
  rs38342538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3402773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAGAG AGAAAGAAAC
  AAAATCTGGT TATTAGTTTC TTGATATTTT TATTTCTTTT GACTCTTTTT GGTACAAGGA
  CTCATGAGTA TTGCTTCTCA ACAACAACAA CAACAACAAC AACAACAACA ACAACAAAAG
  AAATTTCAAA GCTCTCCCTA CGGAGAAGCA AGGTTTTCGA AAATCATCAG TGCGTTTAGC
  Y
  TTCAATATTT CATGGCAAGT CTTTTTGAGT GCCTTTGGTA ATGCGTGGGC AGGTATATTA
  GCCCTTCCTA TCAACTCTGA ATTGGCTGGT TATCCTTGCT TCAGATGCAC AAACTGGAGT
  GCTGCCTCAC AAACATAATG AATCAAATAA AGGGGTTGTA ACCATTCAAG TTTGTCATCT
  TAAATTTGCT GAGTTGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50638829	NES14033324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38342538					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50638829	NES14033324	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3402773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21331	CpG island 21331	1100 bp proximal
Cwf19l2	CWF19 like cell cycle control factor 2	819 bp upstream
Rr401237	regulatory region 401237	594 bp upstream
Rr673633	regulatory region 673633	323 bp proximal
Rr673634	regulatory region 673634	329 bp proximal
Rr673635	regulatory region 673635	527 bp proximal
Rr673636	regulatory region 673636	762 bp proximal
Rr673637	regulatory region 673637	830 bp proximal
Tssr83616	transcription start site region 83616	1266 bp upstream
Tssr83617	transcription start site region 83617	1285 bp upstream