rs38344672 SNP Detail

Summary

• ID
  rs38344672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87973419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTGCCA AGGCAGATTA
  TGGTTGAGGG TATAGTGAGG GTTGAGAATT GTCTAAGCCA TCATGAAATT GTGATGATTT
  TGATGCAAAG GCAAGGAATG AAATCTGCAT GGTTGGCACC ATAAATGATC CCTGTCCTTT
  ACCCCCTCCT ACCATAGTTC AGTCTATCAA GTTCCCCTTT TCCCAAGCTC CTTTCCTGTA
  Y
  AGTACAAAGA TTCAGCAGTT TTTCTGTAAA GGGTGGCCCT GACATGTCTT TTGAAAAGTC
  AGAGCAGTAA TAAGCTCTAA GAACTCTTAT TTGTCCTCTT AGAACCTTCC ATTCCTTAGC
  AATCTGATGA TGCTACATTC TGTCTGTTGT ATTCTCTGGT GGCCTCACTT CTCCCAGACT
  TTATCCTTCG TAATTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51174240	NES13832859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38344672					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174240	NES13832859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87973419 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	1139 bp downstream
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	137 bp upstream
Rr378252	regulatory region 378252	1864 bp downstream
Tssr46931	transcription start site region 46931	115 bp upstream
Tssr46932	transcription start site region 46932	199 bp upstream