rs38345661 SNP Detail

Summary

• ID
  rs38345661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113368052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG TAAAGCCAAG GCCTAGCAGA
  K
  ATGACCTGAG ACCAGACCGG GGCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	LG/J	SM/J
ss50460397	NES14119626	PERLEGEN	MM_PANEL2	f	SNP	T	G
ss322424347	CHEV_7_120912329	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	LG/J	SM/J
rs38345661					SNP	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460397	NES14119626	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113368052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1792 bp distal
Rr653860	regulatory region 653860	864 bp distal
Rr653861	regulatory region 653861	within coordinates
Rr653862	regulatory region 653862	460 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates