rs38346483 SNP Detail

Summary

• ID
  rs38346483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131077238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAGTG TTTTTTCTGA
  CCTTGCTGTA AAAGCTTACC AGTGCGGTTT ACATAGCAGC CTGGTGTTTG CATGGGCCCG
  TATTGATCAG TGTGGGAGGG AACTGGATCG TCAGTCAGGG CTGTCTATCC TCAGCTCTGG
  CTACTGTGCT ATGCCAAGGT CCTGGAGAGC TGTTTACATC ATAGAGTCCC TTTGTCACAC
  R
  TGTTGCGTCT ATGAGTTGTT CTTTTTCTCT GAGCTAATAC CACTCTTTCT TTCTTTCTTT
  CTTTCTTTTT CTTTCTTTCT TCCTTCCTTC CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTCTTT CTTTCTTCCT TCCTTCCTTC CTTTCTTCCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTCTTT CTTTCTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51633026	NES14658230	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38346483					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633026	NES14658230	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131077238 () rs orientation: forward

Symbol	Name	Function Class
Gm18492	predicted gene, 18492	379 bp downstream
Rr585318	regulatory region 585318	within coordinates
Rr585319	regulatory region 585319	226 bp proximal