rs38347140 SNP Detail

Summary

• ID
  rs38347140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92031875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGAGAAG TGAGCATAAA
  ATGCATTCTG TTGAAAGGAG CATAATCACT GTGAAGACTT CAGTGCAGAA CCTGGATAAT
  AAATTTCAGG TTTTGATGTA ACTATTACTG CCTGTGAAGA ACCCTTTGAT GATAATTGAA
  ACCACTGGGC AACAATCTGC TTTATAGCAC TGACAAATAG CAGTTTCCTA AGGCTTATCA
  Y
  TTAAGGTTAG TAAAGAGAGG ACACATATTT ACCCCATATG TTCCAGAAAT GCAATTTTTA
  ACGCATGACC TTATATAGGA ACACTGGATG CACTTAAACA TAGTCACAGA GTGTGATGTG
  GTAGGCCATG TCTACAACCA ACAGTGAGTT AGAATTTCCA GAAAGTGAGC TAAAATTATG
  TAGACTTAGG TAGTATAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605911	NES14042919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38347140					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605911	NES14042919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92031875 () rs orientation: forward

Symbol	Name	Function Class
Gm45428	predicted gene 45428	720 bp downstream
Rpgrip1l	Rpgrip1-like	within coordinates
Rr382458	regulatory region 382458	within coordinates
Rr406224	regulatory region 406224	within coordinates
Rr407238	regulatory region 407238	within coordinates
Rr667510	regulatory region 667510	285 bp distal