rs38347143 SNP Detail

Summary

• ID
  rs38347143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59996047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAAGAT CATTCAGAGA
  CTTCTGATGA CCCAGACAGT GGCAAACAGG CACCATTGCA CTATCCGACC ACACTTGTAC
  ATCTGCTCCA CTATACAGTC TGTGTGGCCC AAGGGACTGT CCAACCACAC CCACGAGTCC
  ACATCTCATA CTGTCTGGGC GGCCCGAGGT ACTGTCTAAC CATGCTCTCA TGCATGTTCC
  Y
  CTGTTCTCAT ACAGTCTGGC AGGCTCTGTC TTAGTTTATT TATTTATTTA TTTTTTTATC
  ATTCCATATC TTCTCAGTTC ACTGCAGGCC CCACCAACCT CACTGCCTCT CAGTTTAATT
  CCATATCTGA CCCTTCTCTG AGCCCTCACT TCCGGCGTTT TCCTCCATTG TGTAACCAAA
  GGTGTCCCTA AAGGCCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52023981	NES15040333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38347143					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023981	NES15040333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59996047 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	247 bp distal
Rr204367	regulatory region 204367	290 bp distal
Rr209877	regulatory region 209877	755 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates