rs38348286 SNP Detail

Summary

• ID
  rs38348286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5539700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCTCC TCTTTTACAC
  CCTTTATTCA GCTTGGGGAG GTCAAGGGCC CCGGTTTCCT TTGCCTCTGA GTTGTTTGCG
  ACTTTGCCCT TTTTTTCTAA GGCCATGGTC ATTGTTTCAG GTCAGAGAAA TTCTCCTGGA
  GTTCCCACCC CAGTTTATTT TAAACTTTTG CTTTCATATA GATTCTCTTC AGTCTTTGTG
  Y
  TAAAATGATC ATAAACCTAT CAACTCTGGA ATTAAATTGA AGTATTCCTT TTCCTGTATC
  GTAAAAGAAA CATAAAGAAG TTTTTTTTTT GTTTTGTTTT GTTTTGTTTT GTTTTTTGAT
  TTTTCAAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTCCT GGAACTCACT TTGTAGACCA
  GGCTTGCCTC GCACTCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50578866	NES13652102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38348286					SNP	C	C	C	C	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578866	NES13652102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5539700 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	474 bp upstream
Cfl1	cofilin 1, non-muscle	783 bp upstream
Cpgi10453	CpG island 10453	1302 bp distal
Cpgi10454	CpG island 10454	193 bp distal
Cpgi10455	CpG island 10455	581 bp proximal
Gm59148	predicted gene, 59148	within coordinates
Mus81	MUS81 structure-specific endonuclease subunit	1239 bp upstream
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	1120 bp downstream
Rr370433	regulatory region 370433	1698 bp upstream
Rr405805	regulatory region 405805	372 bp downstream
Rr405806	regulatory region 405806	501 bp upstream
Tssr154437	transcription start site region 154437	311 bp downstream
Tssr154438	transcription start site region 154438	803 bp upstream
Tssr154439	transcription start site region 154439	840 bp upstream
Tssr154440	transcription start site region 154440	885 bp upstream
Tssr157605	transcription start site region 157605	1276 bp upstream
Tssr157606	transcription start site region 157606	722 bp upstream
Tssr157607	transcription start site region 157607	700 bp upstream
Tssr157608	transcription start site region 157608	614 bp upstream
Tssr157609	transcription start site region 157609	581 bp upstream