rs38352311 SNP Detail

Summary

• ID
  rs38352311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69620659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTGTA GTGATGTTTA
  CTGTTTGCCA GGTACTCCGG TGCACTGCGT AGAGCAAACA ACTTAAACTC CCATGGGAAC
  CTCTGCGGCC CATGATAAAA CCATCCTCTA TTTACATGAG GACAAGGCAC AGCGTTTAAG
  GAACAAGATC ACACAGACAG TAAAAGACAG GCTGTGGAAT CAACTCTGGA TGGTGCAGTC
  Y
  TTGGGTTTCT GTCCCGACAC ACTTTATTCC AAAGGCACAG GGAGAAACCA TTACCATACA
  GAGGACTTGT CCTAGCATAT TGTACATACT AGTCACAGAC TTCATCTTGT AATGAGTGAC
  AGGGCCTCAG TGGCTGGGTG GTCTGTGTTC TGTGTCACGT GGGTCTTAAG GTTTTAACAA
  CTTCACCTGC CTTTACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017773	NES14400701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38352311					SNP	C	C	C	C	T	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017773	NES14400701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69620659 () rs orientation: forward

Symbol	Name	Function Class
Rr257073	regulatory region 257073	459 bp distal
Rr257074	regulatory region 257074	742 bp proximal
Rr403327	regulatory region 403327	659 bp upstream