rs38353927 SNP Detail

Summary

• ID
  rs38353927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35700030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGCGT TCAGACCCTG
  CAATGAAAAG TTTTCCTTAG TACTAATTTA TTTTCTTGAG CTTAGGAATT GCTGAAAGTA
  AGTTTAGGCT ATACAAGCTT AGGAGTAAGG GAAACTAGCA TAAAAGGTAG ATGTTGAGTA
  ACCTGTGCCC CTGTGGGTGG GTCATTAAAC CCCACGCCCT TTTTTTTCTT TCTGGTCTAC
  M
  ATTTTGAAAT ACAAATAATG ATCTAAGTAT TATAGTCCAT TAACACTAGT CCCAGCCCTT
  TTCCTAATTT ACAACTTAGG TTAGACCACA TATCACAATA AAACTCAACC TTGGGGCTAG
  AGAGATGGCT TAGTGGTTAA GAGCACTGAC TGCTCTTCTG AAGGTCCTGA GTTCAAATCC
  CAGCAACCAC ATGGTGTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51633340	NES14588644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38353927					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633340	NES14588644	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35700030 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	1485 bp proximal
Rr309492	regulatory region 309492	1341 bp proximal
Vps13b	vacuolar protein sorting 13B	within coordinates