rs38355723 SNP Detail

Summary

• ID
  rs38355723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118012488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAGGGG TGTTGATACA
  ATGCTTGATA TGGGCACATC ACAGCACAGT GTCTCCAGAT TCCTCAGTGT CATCGTGAGG
  TGTGGTGCTG TTACAGACAA TGGGTGGGTA TAGAAGACAG GCACAAAGCT CATGGACCCT
  GCAGACTCCA CCAAAGGGAA GTCTCTGGCT CAAAACCTCA ACAGTCAAGG CCCAGATAGT
  K
  TCACTTGCAG CGAGGTGACT CAGGGCAGCC TGGCAGACCC TGGACTGGGG CCGTGGCAAA
  ATAAAGTCAG CCAGCCAGCC TTCCCAGAAG TCACAAGACA ACTGCTCCCT GAGTCAGTGT
  TTGTTCTTTT GTGGGAAAAT CATAAAAAGC ACAGCCACCG TGCCTGCATT TGCCCAGCGG
  ATGGGCGTTT GAGCGCTTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51190913	NES13825926	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38355723					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51190913	NES13825926	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118012488 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Gm37028	predicted gene, 37028	1504 bp downstream
Nos1	nitric oxide synthase 1, neuronal	within coordinates
Rr618744	regulatory region 618744	311 bp distal