rs38356549 SNP Detail

Summary

• ID
  rs38356549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38351748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCACAG AGAAGGACCA
  GGCATTCTCT CAGTATGGAT TTAGACTGTC TTGTTGGAGT TGAAATGAGG CACCTCAGGC
  TGCATGCTCT CCTCTTAGCA ACACTACTCA CTATGCCTTA GTTTGAAAGC AGAAGAAATG
  GGGATGAGGA CACCTTTGGG TGGGATTAAC TTGGTGACAA CTGCCTAGAG CAAGTAGCCA
  K
  TTGGCTCCCA GTGAGTTTTG TCTGCAAGTA ACTGTGGTCT CCTTCCAAGT TGCATAGGAG
  TGACCTCAGT AATCCGAAAT GACCTAATTT TAGGAGTCAC AGTGTGGCTT CCTCTTTGCT
  CCCTACCTCT GGGGAAACCG ACTCTCAAAT GATGGAGACA TTCAAGTCAC GCCATGAAAA
  GGCCCATGTG GCAAGCAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss51288149	NES13774340	PERLEGEN	MM_PANEL2	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs38356549					SNP	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288149	NES13774340	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38351748 () rs orientation: forward

Symbol	Name	Function Class
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1994 bp upstream
Rr144024	regulatory region 144024	101 bp distal
Rr146156	regulatory region 146156	1852 bp proximal
Tssr55644	transcription start site region 55644	1921 bp upstream