rs38358228 SNP Detail

Summary

• ID
  rs38358228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11348396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTATTA AAAATGGAAA
  ATGTAGGTGA AACATCACAG GTATTAGAAG CTAAGGCTCT ACATTTTATA GTATAGGAAA
  GAACAAAATG TAACTGTGTC TTTAGAGCTT GAGATGTCTT CTAATCTATT TTTCAGTCTG
  GAATGTATAC CTACAGTTGT GTTTTTTTTG TGATAATTGA TTGAGGTACA CATGCTTTAA
  Y
  CCATCTGCAG TATTAGCACC AAAACTATAT CTCAAGCTTT GAGTTTGTTC AAAGAGAGAA
  TCTAAACTGA TTTTAAAAAT GCCATTCTCA AAGGTTTTCC ACATTCCTAT GCGAATGGAT
  TGTATAGTAA AAATATTGTT CTATATGTAA TACATGCAAA ATTTTAAAAG CATTAATCAT
  GCTTTCTATG ATGTCTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50596012	NES13637796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38358228					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596012	NES13637796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11348396 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	210 bp proximal
Tssr155162	transcription start site region 155162	1499 bp upstream
Tssr155163	transcription start site region 155163	1509 bp upstream
Tssr155164	transcription start site region 155164	1531 bp upstream
Tssr155165	transcription start site region 155165	1625 bp upstream
Tssr155166	transcription start site region 155166	1663 bp upstream
Tssr158339	transcription start site region 158339	1210 bp downstream
Tssr158340	transcription start site region 158340	1317 bp downstream
Tssr158341	transcription start site region 158341	1344 bp downstream
Tssr158342	transcription start site region 158342	1893 bp downstream