rs38360150 SNP Detail

Summary

• ID
  rs38360150
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12827077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGGTC ACTGTTGGTT
  AGTCAGGTTG TGGCTGTATT TGAAATTGAA TTCAGGTTTC ACTGGGATTT TTCTGTGTGT
  GTGTGTGTGT TGGTTTGATC CTAGCTCTAC AGTGAAGGGA AATTTGTCTG TGGAGGATGG
  AGGACGTCTT TCCTTAAGTC TTTTACTAAA CCAGAGACTG GAGGTGGCTG CTTTTGGTCA
  K
  CTTAGCAATG GATAGTTTTG GGCTAGCACA ACTGTCCAGC TAATAAGGAC AGCAGGCAGT
  TTGCTTGGAA AATGGACAAT AGCTCAGTAT TTTGTGAATA CAAATCCTGA TTTTGTGAAT
  AGGCTAAAAT TACTGATAAG GTAGTTTTAT AAATTTTGTA AACAAAAACG CCCCCTCCTC
  TCATTTTTAG CACTGGCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51593089	NES14609156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38360150					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593089	NES14609156	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12827077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6961	CpG island 6961	1635 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	251 bp distal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	476 bp distal
Rr369911	regulatory region 369911	1850 bp downstream