rs38364559 SNP Detail

Summary

• ID
  rs38364559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129203017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCCTCCT TCTAATTCAG TTAAGGCTTC
  CCAAGAGCCA CTTAAGGATA CCACTAACCA AATCACGAAG TCCTGTTCAG TGGTGAGTGT
  GCGCTTTCGA CTTTGTGGGT TGAGGGTTAT ATAGAAAGTT TCAATCTTGA GGCTTTCCTT
  Y
  GATGCTCTCC TGTTTTTAAA CCTCAGTGCC ATTTCTAACT AGGTCTTTGA AAACTTAACC
  TGGCAAGTTC CGTTGTCTTA GGGGCACAGG ATCAGCAGGA GGGAGTGGAA TCCTCCAGCT
  TGGCTTCTAC TTTCCCTGGT TATTGTGTAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51361748	NES14480836	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	C	C	C		C
ss319968996	CHEV_1_131171857	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38364559					SNP	T	T	T	T	T	T	T	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361748	NES14480836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129203017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	1460 bp distal
Rr28456	regulatory region 28456	416 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8548	transcription start site region 8548	1810 bp downstream
Tssr8549	transcription start site region 8549	1798 bp downstream
Tssr8550	transcription start site region 8550	1782 bp downstream