rs38367178 SNP Detail

Summary

• ID
  rs38367178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:108624406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGCAGG CCTGGAGCTC
  ATTTACAACC CAAAGTCCTT AACACAGTTC CAGCTGCCTT AGACCATGTT TGGGGAGGAA
  GGGATGTGTG CTGGGCCAAG TCCCAGGAGA ACTCTATCTC ATGGTCTCCT CCCAGCTCCC
  TCATCTTCAG CCCATAGATT TACCGTCCCT CTCCTGACTG TATGGACAAA CCAACAAGTT
  Y
  GCCTTGACTT CCCTTTCCAG ATAAGGGCCA GGCATCCATC CAGCCTGGCT GCCAGTGCTG
  TTTACGTCAA TGACCTGCAC AGCCCTCCAC AATGCACCTT GCCTTTGACT TACTTTATGA
  CTTGGCGTAG TGCGCTCTCC TGCTTGTGAT ATTTCTTATG TACCACTCTG AATGTGGATT
  CACTCCAGAT GCTCAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51047127	NES14373341	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C		C	C	C	C		C
ss324154903	CHEV_12_109896357	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38367178					SNP	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047127	NES14373341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:108624406 () rs orientation: forward

Symbol	Name	Function Class
Evl	Ena-vasodilator stimulated phosphoprotein	within coordinates
Mir342	microRNA 342	473 bp upstream
Tssr114995	transcription start site region 114995	532 bp upstream