rs38368413 SNP Detail

Summary

• ID
  rs38368413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190546547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTTCTC TCTTTCATTT
  TTCACACGTA CATTTCAGCA CTATATTAGC GTTCTGCCTG ACAGAAAGGG CTGCTCCATC
  TCTGCCCACA GTGGCAGAGC ATTGTTTGAG GGGTCGGGGG AGAGCAACTT AAGTTATTGA
  CCAAGCTCAT CTGTGCTTCA GCCCCACCAG AACCATGAAT GACCACGTAC ACTCAGAAAG
  R
  AGGAGAGAGC AATACACAAG GGAGAGAAAA CTTACCATTT ACCTCATAAC TGGGGGAGAA
  AACGATGGTA CCTCATGCTA CATTCTCTTC TCAAAATAGG CCACACCGGA CTTGACAAAT
  GTTTAAGTGA TTTCTTTTGG GAGCATTAAA ACATCACCAT TCTGCAGACG TGTGCGTCTG
  TGTGCACCAA ACGGGCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51425186	NES14447832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38368413					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51425186	NES14447832	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190546547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70960	predicted gene, 70960			within coordinates
Rps6kc1	ribosomal protein S6 kinase polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr425988	regulatory region 425988			1869 bp proximal