rs38371334 SNP Detail

Summary

• ID
  rs38371334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10268010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAACAA TGTAGAATGG
  TATAATTTGA TAATATTCAC TGAACAATTT TAAGTCATTC TCTGTGTGGT ATCTGGTTTT
  TTATGCATTG ATGTAGCATC CTTTTTGCTT TGGTTCTGTT ACTTCTCACT GTATTTTTTA
  AAATAAATAG CTGAAACTTA CACGGATGTT TAAAAATCCC TGACATATAC ATTGTCCACA
  Y
  TTACAAAATC AGATTAGTAT GATTCCTTCT TGGACATAAG TATTTATATA AAACATACAC
  AAGCTTTCTC TCTAACACAT GAATGTTTAT ATACACAAAT AGCAGCTTTT ACCTGTACAT
  TTTAAAAATG TTTTCTGAGG GCTAGAAAGA TGGCTCAGTA GTTAAGAGTC CAGACAGCTT
  TTCTAGAGGG TCTGGATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51070159	NES14373055	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38371334					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51070159	NES14373055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10268010 () rs orientation: forward

Symbol	Name	Function Class
Chrm3	cholinergic receptor, muscarinic 3, cardiac	within coordinates
Rr281932	regulatory region 281932	1991 bp proximal