rs38375943 SNP Detail

Summary

• ID
  rs38375943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86413980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAAGGAA AAAGGGTAAG GAAAACAAAC TTGAAATCAC
  AGCTGAACTC CTGATCCTTA GAAGGAGCCA GGTCCTAGAG GAACAGGAAT ATGCAGGCCT
  R
  TGAGGAAACA CTTGAGGAGG AGGTCCACTA ACTAGCGGGC AGCTGGCGTT GCCTGATACC
  ACTGGGACAT ACAATGCAAT GAATGGCTTA ACTTAATATC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753292	NES14806755	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38375943					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753292	NES14806755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86413980 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	1376 bp upstream
Cpgi17664	CpG island 17664	1092 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	485 bp downstream
Rr368111	regulatory region 368111	1516 bp upstream
Rr399735	regulatory region 399735	1189 bp upstream
Tssr57468	transcription start site region 57468	1362 bp upstream
Tssr57469	transcription start site region 57469	1417 bp upstream
Tssr57470	transcription start site region 57470	1668 bp upstream
Tssr57471	transcription start site region 57471	1716 bp upstream
Tssr57472	transcription start site region 57472	1750 bp upstream
Tssr61792	transcription start site region 61792	1620 bp downstream