rs38376400 SNP Detail

Summary

• ID
  rs38376400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61844844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTATTA CAACTTCATC
  TCATCCTGAA TTCACGATTT AAGTCTGCAA AAACTACCGA ACAATAAAAA AACATACTAC
  GAATCTACTT GCAAGACTAC ATGGAAAGAA GATCAGAACA CTTTTTAGAC AAGAGAACTC
  CTAAAATTGC AGTTTGTCCT AGTTTCCTGT CAAGGACAGC TAGTAACTCC AAAATAGACA
  Y
  GGCTCGTTTC TCATTGTTTC CATCTGTCAA CCTTGTAGTA ATGAGGGCAG GAGGGGGCAA
  ACGCCAACTG TGGAATTTCA CTGCTTATTA AATTTACAAT ATTCGCCTAG TGGAGGAGTA
  AAATAATGCC TTGCCAAGAG AATCTTCTGA CTTCAGAAGG TGCTGGGAAC AAACCCTGGT
  TCTCTGGGAG AGCAGCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J
ss50425990	NES13455515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
ss325645175	CHEV_18_61871427	CHEVERUD	SCREENING_POP	f	SNP							C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	SM/J
rs38376400					SNP	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425990	NES13455515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61844844 () rs orientation: forward

Symbol	Name	Function Class
Gm17883	predicted gene, 17883	1922 bp upstream
Grpel2	GrpE-like 2, mitochondrial	651 bp downstream