rs38380438 SNP Detail

Summary

• ID
  rs38380438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTCTAAG TGCACAACGG
  AAATCTGATG GGAGCTGATG AGTATACGGC TTCATGAACC ATCATACTGT GGTCCATGTA
  CCAGCTGATT AGCGGGGTGA CTGCCGAGTT ACTTTAGAAT CCTGAGTGGT TTTCCTGGGT
  TTGGAGAGCT GTTCAAAGCT TTCTGGGTCT CCCCTTCATG TCCCAGTTTG CCACAAAGTG
  R
  GAGTTCGTCT GAAGAGTTTG GGGTCAGAGT GACTGCTCCA GCATGTCTAG GCAGTAACGG
  TTTCTTGCCA TTCTCCTGTC CCCAGGATGA CTGAGTGGGA AGCAGCCACA CCAGCGGTGG
  CAGAGACCCC TGACATCAAG CTCTTTGGGA AATGGAGCAC TGATGACGTG CAGATCAACG
  ATATTTCTCT GCAGGTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469119	NES13985240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38380438					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469119	NES13985240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	102 bp distal
Gm57203	predicted gene, 57203	760 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	639 bp downstream
Rr642402	regulatory region 642402	797 bp distal
Rr642403	regulatory region 642403	587 bp distal
Rr642404	regulatory region 642404	490 bp distal
Tssr64485	transcription start site region 64485	567 bp downstream
Tssr64486	transcription start site region 64486	67 bp upstream
Tssr70626	transcription start site region 70626	791 bp upstream