rs38385615 SNP Detail

Summary

• ID
  rs38385615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86627548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAGTAG AGCCGCCTCA
  GCACTGCGAC CGGGCCGCAG CAGGGCTTGC TGGAGGTGCT CCTGGCTTCT CAGTGCTCTT
  CGGTTTTGCT TTCAAAGCTT CCTTTGGGGT TTCTGCGATT GAGTTCCCTT TGAGAAGTTT
  GCTTGCTGTG GTTTCCTATG TGCCAGACAA AGCTCCAACT TCTCTCCTGG GCGAGTATCA
  Y
  CGTGAGCCAG AAAACTAGGA AAGATCTCGT CAGCTGCAGG ACAGTGCACA GGGGGCTGCT
  GAGAGGTGAC ACTTGCTTGG GCTAAGGATT CTTGGGTGCT CTGAACTGAC TGGAATGTGC
  AGTCTCTCAG TGCCGACATG TATGGACAGA GAAGCGACTG ACTGCACTCA AGACCACAAC
  CCTATGTGCT TTCTGCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51751321	NES14802915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38385615					SNP	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751321	NES14802915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86627548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mxd1	MAX dimerization protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr61827	transcription start site region 61827			1524 bp upstream
Tssr61828	transcription start site region 61828			1137 bp upstream
Tssr61829	transcription start site region 61829			584 bp upstream
Tssr61830	transcription start site region 61830			393 bp upstream